Multiple alignment comparison of the non-structural genes of three strains of equine influenza viruses (H3N8) isolated in Morocco
Identifieur interne : 000544 ( Main/Exploration ); précédent : 000543; suivant : 000545Multiple alignment comparison of the non-structural genes of three strains of equine influenza viruses (H3N8) isolated in Morocco
Auteurs : Mohamed Boukharta [Maroc] ; Souad Azlmat [Maroc] ; Mehdi Elharrak [Maroc] ; My Mustapha Ennaji [Maroc]Source :
- BMC Research Notes [ 1756-0500 ] ; 2015.
Abstract
Three equine influenza viruses, A/equine/Nador/1/1997(H3N8), A/equine/Essaouira/2/2004(H3N8), and A/equine/Essaouira/3/2004(H3N8), were isolated from different Equidae during local respiratory disease outbreaks in Morocco in 1997 and 2004. Their non-structural (NS) genes were amplified and sequenced.
The results show high homology of NS nucleotide sequences of A/equine/Nador/1/1997 with European strains (i.e., A/equine/newmarket/2/93 and A/equine/Grobois/1/1998) and clustered into the European lineage. However, NS gene of A/equine/Essaouira/2/2004(H3N8) and A/equine/Essaouira/3/2004(H3N8) strains indicated high homology with equine influenza strains that had circulated before 1990 (A/equine/Fontainbleu/1/1979(H3N8), which belonged to a pre-divergent phase Amino acid sequence comparison of the NS1 protein with reference strain A/equine/Miami/1963(H3N8) shows that the A/equine/Nador/1/1997(H3N8) strain has 12 substitutions at the residues D/24/N, R/44/K, S/48/I, R/67/Q, A/86/V, E/139/K, A/112/T, E/186/K, L/185/F, A/223/E, S/213/T and S/228/P. In both A/equine/Essaouira/2/2004(H3N8) and A/equine/Essaouira/3/2004(H3N8) strains, the NS1 sequences present one common mutation at the residue: S/228/P.
It seems that all of these substitutions are not produced at the key residues of the RNA-binding domain (RBD) and the effector domain (ED). Consequently, we can suppose that they will not affect the potency of inhibition of cellular defences, and the virulence of the Moroccan equine strains will be maintained.
Url:
DOI: 10.1186/s13104-015-1441-0
PubMed: 26404167
PubMed Central: 4581100
Affiliations:
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uniqKey="Azlmat S" first="Souad" last="Azlmat">Souad Azlmat</name><affiliation wicri:level="3"><nlm:aff id="Aff2">Department of Biology, Instruction Military Hospital Med V Rabat, University Mohammed V Souissi, Rabat, Morocco</nlm:aff><country xml:lang="fr">Maroc</country><wicri:regionArea>Department of Biology, Instruction Military Hospital Med V Rabat, University Mohammed V Souissi, Rabat</wicri:regionArea><placeName><settlement type="city">Rabat</settlement><region nuts="2">Rabat-Salé-Kénitra</region></placeName></affiliation></author><author><name sortKey="Elharrak, Mehdi" sort="Elharrak, Mehdi" uniqKey="Elharrak M" first="Mehdi" last="Elharrak">Mehdi Elharrak</name><affiliation wicri:level="1"><nlm:aff id="Aff3">Society of Pharmaceutical and Veterinary Products, Virology Laboratory, Av Hassan II, BP 4569 Rabat, Morocco</nlm:aff><country xml:lang="fr">Maroc</country><wicri:regionArea>Society of Pharmaceutical and Veterinary Products, Virology Laboratory, Av Hassan II, BP 4569 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type="main">Multiple alignment comparison of the non-structural genes of three strains of equine influenza viruses (H3N8) isolated in Morocco</title><author><name sortKey="Boukharta, Mohamed" sort="Boukharta, Mohamed" uniqKey="Boukharta M" first="Mohamed" last="Boukharta">Mohamed Boukharta</name><affiliation wicri:level="1"><nlm:aff id="Aff1">Laboratory of Virology, Microbiology and Quality/ETB, Faculty of Sciences and Techniques, Mohammedia, University Hassan II Mohammedia-Casablanca, PO BOX 146, Quartier Yasmina, Mohammedia, 20650 Morocco</nlm:aff><country xml:lang="fr">Maroc</country><wicri:regionArea>Laboratory of Virology, Microbiology and Quality/ETB, Faculty of Sciences and Techniques, Mohammedia, University Hassan II Mohammedia-Casablanca, PO BOX 146, Quartier Yasmina, Mohammedia</wicri:regionArea><wicri:noRegion>Mohammedia</wicri:noRegion></affiliation></author><author><name sortKey="Azlmat, Souad" sort="Azlmat, Souad" uniqKey="Azlmat S" first="Souad" last="Azlmat">Souad Azlmat</name><affiliation wicri:level="3"><nlm:aff id="Aff2">Department of Biology, Instruction Military Hospital Med V Rabat, University Mohammed V Souissi, Rabat, Morocco</nlm:aff><country xml:lang="fr">Maroc</country><wicri:regionArea>Department of Biology, Instruction Military Hospital Med V Rabat, University Mohammed V Souissi, Rabat</wicri:regionArea><placeName><settlement type="city">Rabat</settlement><region nuts="2">Rabat-Salé-Kénitra</region></placeName></affiliation></author><author><name sortKey="Elharrak, Mehdi" sort="Elharrak, Mehdi" uniqKey="Elharrak M" first="Mehdi" last="Elharrak">Mehdi Elharrak</name><affiliation wicri:level="1"><nlm:aff id="Aff3">Society of Pharmaceutical and Veterinary Products, Virology Laboratory, Av Hassan II, BP 4569 Rabat, Morocco</nlm:aff><country xml:lang="fr">Maroc</country><wicri:regionArea>Society of Pharmaceutical and Veterinary Products, Virology Laboratory, Av Hassan II, BP 4569 Rabat</wicri:regionArea><wicri:noRegion>BP 4569 Rabat</wicri:noRegion></affiliation></author><author><name sortKey="Ennaji, My Mustapha" sort="Ennaji, My Mustapha" uniqKey="Ennaji M" first="My Mustapha" last="Ennaji">My Mustapha Ennaji</name><affiliation wicri:level="1"><nlm:aff id="Aff1">Laboratory of Virology, Microbiology and Quality/ETB, Faculty of Sciences and Techniques, Mohammedia, University Hassan II Mohammedia-Casablanca, PO BOX 146, Quartier Yasmina, Mohammedia, 20650 Morocco</nlm:aff><country xml:lang="fr">Maroc</country><wicri:regionArea>Laboratory of Virology, Microbiology and Quality/ETB, Faculty of Sciences and Techniques, Mohammedia, University Hassan II Mohammedia-Casablanca, PO BOX 146, Quartier Yasmina, Mohammedia</wicri:regionArea><wicri:noRegion>Mohammedia</wicri:noRegion></affiliation></author></analytic><series><title level="j">BMC Research Notes</title><idno type="eISSN">1756-0500</idno><imprint><date when="2015">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><sec><title>Background</title><p>Three equine influenza viruses, A/equine/Nador/1/1997(H3N8), A/equine/Essaouira/2/2004(H3N8), and A/equine/Essaouira/3/2004(H3N8), were isolated from different Equidae during local respiratory disease outbreaks in Morocco in 1997 and 2004. Their non-structural (NS) genes were amplified and sequenced.</p></sec><sec><title>Results</title><p>The results show high homology of NS nucleotide sequences of A/equine/Nador/1/1997 with European strains (i.e., A/equine/newmarket/2/93 and A/equine/Grobois/1/1998) and clustered into the European lineage. However, NS gene of A/equine/Essaouira/2/2004(H3N8) and A/equine/Essaouira/3/2004(H3N8) strains indicated high homology with equine influenza strains that had circulated before 1990 (A/equine/Fontainbleu/1/1979(H3N8), which belonged to a pre-divergent phase Amino acid sequence comparison of the NS1 protein with reference strain A/equine/Miami/1963(H3N8) shows that the A/equine/Nador/1/1997(H3N8) strain has 12 substitutions at the residues D/24/N, R/44/K, S/48/I, R/67/Q, A/86/V, E/139/K, A/112/T, E/186/K, L/185/F, A/223/E, S/213/T and S/228/P. In both A/equine/Essaouira/2/2004(H3N8) and A/equine/Essaouira/3/2004(H3N8) strains, the NS1 sequences present one common mutation at the residue: S/228/P.</p></sec><sec><title>Conclusion</title><p>It seems that all of these substitutions are not produced at the key residues of the RNA-binding domain (RBD) and the effector domain (ED). Consequently, we can suppose that they will not affect the potency of inhibition of cellular defences, and the virulence of the Moroccan equine strains will be maintained.</p></sec></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Myers, C" uniqKey="Myers C">C Myers</name></author><author><name sortKey="Wilson, D" uniqKey="Wilson D">D Wilson</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Sovinova, O" uniqKey="Sovinova O">O Sovinova</name></author><author><name sortKey="Tumova, B" uniqKey="Tumova B">B Tumova</name></author><author><name sortKey="Pouska, F" uniqKey="Pouska F">F Pouska</name></author><author><name sortKey="Nemec, J" uniqKey="Nemec J">J Nemec</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Waddell, Gh" uniqKey="Waddell G">GH Waddell</name></author><author><name sortKey="Teigland, Mb" uniqKey="Teigland M">MB Teigland</name></author><author><name 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Zhumatov</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Maroc</li></country><region><li>Rabat-Salé-Kénitra</li></region><settlement><li>Rabat</li></settlement></list><tree><country name="Maroc"><noRegion><name sortKey="Boukharta, Mohamed" sort="Boukharta, Mohamed" uniqKey="Boukharta M" first="Mohamed" last="Boukharta">Mohamed Boukharta</name></noRegion><name sortKey="Azlmat, Souad" sort="Azlmat, Souad" uniqKey="Azlmat S" first="Souad" last="Azlmat">Souad Azlmat</name><name sortKey="Elharrak, Mehdi" sort="Elharrak, Mehdi" uniqKey="Elharrak M" first="Mehdi" last="Elharrak">Mehdi Elharrak</name><name sortKey="Ennaji, My Mustapha" sort="Ennaji, My Mustapha" uniqKey="Ennaji M" first="My Mustapha" last="Ennaji">My Mustapha Ennaji</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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